Science

outbreakR — reconstructing insect outbreaks from tree-ring data in R

This R-based project aims to make insect outbreak histories producible using tree-ring data. While still in its early stages (v. 0.2), it currently allows for fast outbreak history reconstructions using outputs from the popular dplR package. All that’s needed is tree-level host data and a nonhost chronology. Sample data are available through Dropbox

If you have any feedback on this version or you’re a researcher who wants to try these methods, please check my contact information at the end!

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Science

Preparing dendrochronological datasets in R

In 2017 and 2018, I worked in a forestry research laboratory in Washington State. While I worked primarily with R and specialty software like CDendro, the managers I worked with had little-to-no familiarity with my methods. I wrote this report for them as a means to explain my methods in R and create a pipeline that can be reused across every dendrochronological dataset. I’m sharing this here as a means to preserve that pipeline for future analyses.

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